PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 830aa    MW: 88474.5 Da    PI: 6.4065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233616genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054647669123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C++Cg + + k+ L+rH+  H
  MDP0000233616 647 YTCSICGLRLKLKERLERHLEWH 669
                    9******************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.305647674IPR007087Zinc finger, C2H2
PROSITE patternPS000280649669IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MASDFSGVMA NSIDDDAERP ARAASISAGR PWVDPAVKMH RSNTDALSDR VHEENIGAEY  60
GEYEYGSDLH RNSNPGIGRI GGKITETLPT QRNGFNIKHG LTNYSSSKST NADPRLKTAP  120
GIATRNSGGL SSSWKNSEEE EFMWDDMNSR LTDHGPPDIS SNSRKDHWAS DDSEKLGFGA  180
DMDTSANPTE QKDLSALGQR MSSPWTLQDS IGIDRLTPSG TPVISSVHSE RYASSLSGLS  240
TSGDSSVARM GSRAQVASSR IGTSSLGFNA AAGPTGALGK QQLQSVRAAS PSGQSSMHQY  300
SPSPTSAVHP RHHSQSLADQ DFAEEPLPIP TPNVRLGSKA KSQPQDLSSS IPDIQSRHKY  360
PFRQQPDSIE SESFGHTKKP HVPQVSTFST PSTVGDSIPD LSNVLAAESS GQLNTSSLLA  420
AVMKTGILSD KSITCSLPNL NRRDMGHIPS QSGVQPPLQS GPSPTLALPG PKVASAPSSG  480
HLSGENSPAS SNVSQKKVAH LPIPPSQPPS SLDGSASASS TVVSNASDPI SNLLSSLVAK  540
GLISASKSES PTPVPSQKLT ELHNKGLGAP ASKSVSVSPV SVSVSPSRPV TSQTDASLPE  600
PVAKTSAALP QSTKTEIQNL IGIAFKPDII REFHPAVIDE LFNDLPYTCS ICGLRLKLKE  660
RLERHLEWHA LKNPEGSGSV MASRKWYPDL TSWVAGRTVP PLVPEAINSI DEPNEMMDID  720
EPIVPADENQ CACVICGDIF EDFYCQERDE WMFKGASYMS IPSAAGKMET TEESVLKGPI  780
VHANCTVESS LSDSHVKLML RSYLLLFGRN QMLSARSSKL KRQTPCIPNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.89050.0fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386987.10.0PREDICTED: uncharacterized protein LOC103449447
TrEMBLM5VVA40.0M5VVA4_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF436933